9Feb/100
Java code test
package biotest;
import java.util.Iterator;
import org.biojava.bio.BioException;
import org.biojava.bio.seq.DNATools;
import org.biojava.bio.symbol.FiniteAlphabet;
import org.biojava.bio.symbol.Symbol;
public class Main {
public static void main(String[] args) throws BioException {
Main t = new Main();
t.trial();
}
public void trial() {
FiniteAlphabet dna = DNATools.getDNA();
Iterator dnaSymbols = dna.iterator();
while (dnaSymbols.hasNext()) {
Symbol s = (Symbol) dnaSymbols.next();
System.out.println(s.getName());
}
}
}
4Feb/100
Autoregulatory Model
Reactions:
Repression:
DNA+P2 -> DNA.P2
DNA.P2 -> DNA + P2
Transcription:
DNA -> DNA + RNA
Translation:
RNA -> RNA + P
Dimerisation:
2P -> P2
P2 -> 2P
Degradation:
RNA -> Ø
P -> Ø




